How do I remove migrated PPC apps from Intel iMac that has the same apps?

Before I begin, please know that I've read a lot of previous posts but all the posts only had some of what I needed so I'm posting this as a new topic. OK, here I go:
My PPC running 10.5 just froze-up (that has since been solved) but in the process of solving that issue, I migrated everything as a different user (User B) INCLUDING my applications, to my Intel iMac - my iMac that also had the same applications on it - except they were intel versions and they were under User A.
So I essentially did an archive and clean install on my PPC.
Then, using Migration Assistant, I transferred User B onto my PPC. Now both of my computers have duplicates of most of my applications. In trying to fix this issue, I found out I should NOT have transferred my applications. So now I'm very confused as to which apps I should remove off my PPC and which I should remove off my intel iMac.
If I just delete User B from my intel iMac, that's easy enough but will that remove the dupes? I have a funny feeling it doesn't.
And then, which do I remove from my PPC?
AND THEN, are there other things I will need to remove from different places on my computer?
Any help would be greatly appreciated. Thanks!
And now, I've used migration assistant to move everything from user (B) back to my PPC. Now I have duplicate applications with "(from old mac)"

Normally application go in the Applications folder at the top level of the hard drive, not in any user folders. If you have applications in user folders that are the same as those in the Applications folder, you can delete them from the user folders. If you actually migrated PPC applications into the Applications folder on an Intel Mac, it would have replaced the Intel versions. To fix that,you would have to reinstall OSX on the Intel Mac.
The same thing would apply on the PPC Mac.

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