How do I remove the hidden file icons from the Finder folder?

I recently had problems with Final Cut Pro and had to remove QuicktimeX and use Pacifist to re-install QuicktimeX back into the Applications folder.
I now have "hidden icons" that are lightly grayed out in the Finder folder. I was told by the Apple Genious leave them alone until you know the correct way of removing them from the folders because they play an important role in the system folder.
Can someone advise me on how to make them go away again?

LOL! Sorry Niel, I 'm just a beginner when it comes to more the double clicking on the Mac. I just had to laugh at myself after reading your response. I should have been in a Three Stooges movie....
Thank you, it worked and I saved it just in case one of my friends have the same problem. I will fix it for them then claim to be a Mac Genius.

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