How do I restore bookmarks in iBooks on my iPad after upgrading to iOS7?  (Note: restore was done from an old iCloud backup)

Thanks in advance for the help.
Here are the details:
-Upgraded iPad to iOS7
-All of my iBooks needed to be re-downloaded as a result
-The bookmarks in each iBook disappeared
How can I get them back?  This was across multiple books.

Yes, if I right click on a profile in the profile manager when I start Firefox it shows me the path to the profile. It is in the AppData\Roaming section.
For the sake of brevity I haven't typed in the full path name, just enough to let you know where I am putting them, I hope.
I put it there. No good.
I just looked at the profile I restored to the AppData\Local section ( it seems Firefox puts a copy there too ) and merged the one that showed the Cache folders which came from my backup disk with the profile of the same name in the Roaming section.
Still no go. No bookmarks showing up. If I click on the profile folder it shows the Cache files etc. are all there but it doesn't do anything.
This has gotten very aggravating. All files seem to be where they should be but it doesn't work.

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