How do I stop iTunes back up from deleting my photos?

So I went to add some music to my iPhone last night, having added some stuff to iTunes.
It was the third time I plugged my iPhone into the PC, having used itunes to sync it, activate it and all the rest. Plugged it in and was greeted with "welcome to your new iphone... set up as new phone or restore from backup" (the backup being from the previous time I'd plugged it in. Neither of these was the 'correct' option, given that it was the same phone on the same account, so I picked the one that had my phone's name - restore from backup, and without any further prompts it deleted all the photos I'd taken since the last time I'd plugged it into iTunes. Having done that, I was able to get into 'sync' and get stuff from iTunes onto my phone and vice versa.
So my questions are these:
If I go on to take more pictures with my phone, how do I get them on to the pc without iTunes deleting them? I appreciate that Sync is one way to do this, but last night I couldn't [i]get[/i] to sync without letting iTunes delete all my stuff first. Surely I don't have to set it up as a new phone every time?
What might have prompted iTunes to treat the phone as a new phone? I was logged into my usual account (I only have one, and I'm the only person in the house who has one). I don't really understand why it kind of became hostile to a device that it'd already synced with, and I'd like to understand what I can do to avoid it happening again. I don't use iTunes on any other computer, either.

This is where the backups are stored on the computer.
Windows XP: \Documents and Settings\(username)\Application Data\Apple Computer\MobileSync\Backup\
Windows Vista: \Users\(username)\AppData\Roaming\Apple Computer\MobileSync\Backup\
Go to the appropriate folder and remove it.

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