How do I stop iTunes from re-syncing deleted songs to my iPhone?

I manually manage my songs on my iPhone. I have checked albums to import, along with artists, and manually added songs. My question is, there are certain songs from the checked albums that I don't want on my phone. I delete them to save space, but then whenever I add more songs to my phone, either by syncing or dragging and dropping songs, the ones I deleted re-sync. Is there anyway around this?

Yes, others are seeing this. Something in purchased media (I am pretty sure this has only happened with purchased media) is periodically checking back with the iTunes Store and resetting the tags in the iTunes library file but not in the actual media files (metadata are stored in both). I haven't seen a truly systematic diagnosis of the issue (I use an old iTunes and have no iTunes account so I can't test anything myself). There are temporary workarounds but tags will still revert after a time.
2014 discussion about edited tags for Store purchases reverting to originals - https://discussions.apple.com/message/26077896#26077896 - edited tags are still present in the media file but revert to the originals in the iTunes library file. Workaround is to refresh tags so media file tags are re-read and used in library file.
https://discussions.apple.com/message/26193185#26193185
https://discussions.apple.com/message/26335620#26335620 - user ended up rebuilding iTunes library from scratch
Send feedback to Apple about this so they know it is an issue they need to investigate:
http://www.apple.com/feedback/itunesapp.html
Don't expect an immediate solution but maybe the next time they update the software it may be resolved.

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Thank you for providing the details of the issue you are experiencing with iTunes launching unexpectedly. I recommend reviewing the following article to see if any third-party plug-ins could be causing the problem:
iTunes: Troubleshooting issues with third-party iTunes plug-ins
http://support.apple.com/kb/TS3430
Thank you for using Apple Support Communities.
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If I knew the answer I would have given it - but since it is not an iPhoto question I suggested
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tt2

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How do I stop iTunes from re-syncing deleted songs to my iPhone?

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