How do I transfer PDF's in iBook from one device to another?

Backed up old iPad 2 on Mac. Restored to new iPad 2. At first all iBook books and saved PDF collection in iBook was there for maybe 5 seconds. The PDF's suddenly disappeared, while the books are still there! Can't see PDF's, although they are still in iBook on the old iPad 2! Any ideas appreciated.

I see the PDF files in the books tab of iTunes. The PDFs were not visible in the books tab of my device.
The sync directions said to click on the books tab. I selected the PDF button. I selected all the PDFs.
I opened sync my iPad.under files/devices and clicked on "my iPad".
The progress bar rapidly went through 1,2,3 of something appearing to be doing what I wanted but no files transferred.
I repeated the above several times.
Those were the directions under help for ios7.02
What did I do incorrectly?

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