How do I use a Third Party Transition?

Been using Premeire Pro CS6 for about six months from many years onFinal Cut Pro, client wants some effects on his pre-shot video.  I was looking at FX Factory plu-ins and I downloaded the trial of Boinx Software. These only seem to be able to be dropped on a clip as opposed to using them as a transition. The Boinx folder is in the video effect folder, does this mean it can only be used on an entire clip, I don't see the ability to keyframe the effect. I don't want to use "Flip & Reveal 3D" on an entire clip but as a transition.  How is this done ? I can only seem to add a 'default cross-disolve' or one of the other standard transitions.  Is Premeire third Party friendly?
Editing on a MacPro w/Premeire Pro CS6.

I kinda get that but the Boinx tutorial states and shows it being dropped on two clips as a transition, I seem to be unable to do so. Also FX Factory loads in a whole set of folders to try, the 'Pro Transitions' also cannot be dropped down between two clips in the way you would a 'cross disolve'. 
The question still stands, they claim that you can use them as transition, can they?  I been toying with the Boinx plug in's and you have to tell it what video layer to use as a transition layer, however your complete clip gets used as a transition or effect.  No way to key the effect in or out.

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