How do you keep your ipod apps after updating to the 4.0 upgrade?

I first backed up my iPod touch to keep all of my apps. Then I updated it to 4.0, when I got finished it didn't have any of my apps except the original ones from the iTouch. So I went to click restore from back up and it said that the 4.0 update would go away if I restored from backup. So how do I keep my apps and the update? I have bought some of the apps and do not think it would be fair to re buy them.

No, a backup won't do anything, you need to check your sync settings and then re-sync.
1- Connect your Touch to iTunes
2- Verify that your App sync preferences are set correctly
3- Verify that all your other sync preferences (Music, Video, Podcast) are set correctly
4- Click Apply if you made any changes, or click Sync to initiate a sync w/o any changes.
Assuming the missing Apps are in your iTunes, they should be added to your Touch after you re-sync.

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