How does one see what tasks starts when on Mountain Lion?

I have had a beachball problem for a number of weeks now, and still can not figure out what is going wrong after four separate Support Desk people and one Genius Bar visit -- maybe you, my friends in the Apple Support Communities, can help decypher this.
Symptoms:
Invariably, my MacBook Pro (MacBookPro8,2) with Mountain Lion (10.8.2)  -- after exactly one hourof work (59 minutes, 58 seconds and then...) suddenly goes into beachball mode.  No warning -- no new processes -- nothing but the beachball on the dialog I am working on.  Within the next minute, all dialogs are unresponsive and I have to hard reboot my computer.
What is surprising is that when the beachball happens and I restart the system, all of my cookies (e.g., my Facebook login cookie, my Google 2-factor) and other status bookmarks (e.g., where the video stops on iTunes) disappear.
And if I wish to prolong my computer time, I have to put the computer in Sleep Mode for about 5 minutes, come back and get an additional hour of work before the beachball returns.
Scarily, I have watched it happen - and tracked the Activity Monitor and see nothing that pops up at that time point.  No additional memory taken, no additional CPU -- nothing.
What is surprising is that when the beachball happens and I restart the system, all of my cookies (e.g., my Facebook login cookie, my Google 2-factor) and other status bookmarks (e.g., where the video stops on iTunes) disappear.
Additionally,  when I boot in Safe mode - my 16G of RAM is almost totally taken up (15.1Gs) by nothing.  Simply that 15.1Gs are "wired".  The largest process is the mds - and that is only 500M.
Prior Efforts:
I have inspected the disk with Disk Utility, done both the Internet Hardware check (since my Recovery partition did not have it) and at the Genius Bar (with their super-special hardware check) and no problems.  I have removed Launch Agents and Launch Daemons.  I have removed startup items and purged the drive.
I keep being told I will have to erase and reinstall, but I think there is something much simplier here: some software that is being triggered to do something one hour after awaking from sleep.
I saw some people suggest it could be f.lux, but I have turned it off and it still happens.  Additionally, one of my people suggested it was the Time Machine, so I turned it off -- and it still happened.
Any ideas what could be the problem?
As per everyone else, here is my EtreCheck:
Hardware Information:
          MacBook Pro - model: MacBookPro8,2
          1 2.5 GHz Intel Core i7 CPU: 4 cores
          16 GB RAM
Video Information:
          Intel HD Graphics 3000 - VRAM: 512 MB
          AMD Radeon HD 6770M - VRAM: 1024 MB
Startup Items:
          ChmodBPF - Path: /Library/StartupItems/ChmodBPF
          HWNetMgr - Path: /Library/StartupItems/HWNetMgr
          HWPortDetect - Path: /Library/StartupItems/HWPortDetect
          MySQLCOM - Path: /Library/StartupItems/MySQLCOM
          VirtualBox - Path: /Library/StartupItems/VirtualBox
          ZendServer_init - Path: /Library/StartupItems/ZendServer_init
System Software:
          OS X 10.8.2 (12C60) - Uptime: 0 days 0:10
Disk Information:
          M4-CT512M4SSD2 disk0 : (512.11 GB)
                    disk0s1 (disk0s1) <not mounted>: 209.7 MB
                    Macintosh HD (disk0s2) /: 511.25 GB (78.47 GB free)
                    Recovery HD (disk0s3) <not mounted>: 650 MB
          MATSHITADVD-R   UJ-8A8 
USB Information:
          Western Digital My Passport 07AE 500.07 GB
                    disk1s1 (disk1s1) <not mounted>: 209.7 MB
                    Recovery HD (disk1s2) <not mounted>: 650 MB
                    Backup Disk (disk1s3) /Volumes/Backup Disk: 494.59 GB (138.75 GB free)
          Apple Inc. Apple Internal Keyboard / Trackpad
          Apple Inc. BRCM2070 Hub
                    Apple Inc. Bluetooth USB Host Controller
          Apple Inc. FaceTime HD Camera (Built-in)
          DisplayLink UV195
          Apple Computer, Inc. IR Receiver
FireWire Information:
Kernel Extensions:
          com.avatron.AVExVideo          Version: 1.7
          com.displaylink.driver.DisplayLinkDriver          Version: 1.8
          net.telestream.driver.TelestreamAudio          Version: 1.0.5
          com.vara.driver.VaraAudio          Version: 1.0.3
          com.avatron.AVExFramebuffer          Version: 1.7
          org.virtualbox.kext.VBoxDrv          Version: 4.2.4
          org.virtualbox.kext.VBoxUSB          Version: 4.2.4
          org.virtualbox.kext.VBoxNetFlt          Version: 4.2.4
          org.virtualbox.kext.VBoxNetAdp          Version: 4.2.4
Problem System Launch Daemons:
Problem System Launch Agents:
Launch Daemons:
                 [loaded] com.adobe.fpsaud.plist
                 [loaded] com.displaylink.usbnivolistener.plist
                 [loaded] com.fitbit.fitbitd.plist
                 [loaded] com.github.GitHub.GHInstallCLI.plist
Launch Agents:
                 [loaded] com.adobe.CS5ServiceManager.plist
                 [loaded] com.displaylink.useragent.plist
User Launch Agents:
                 [loaded] com.facebook.videochat.sanford.plist
                 [loaded] com.google.GoogleContactSyncAgent.plist
                 [loaded] com.hp.printerAgent.plist
                 [loaded] com.macpaw.CleanMyMac.helperTool.plist
                 [loaded] com.macpaw.CleanMyMac.trashSizeWatcher.plist
                 [loaded] com.macpaw.CleanMyMac.volumeWatcher.plist
User Login Items:
          Flux
          Alfred
3rd Party Preference Panes:
          Air Display Preferences
          DeployStudioServer
          DivX
          Flash Player
          Flip4Mac WMV
          Growl
          MenuMeters
          Perian
          Web Sharing
Internet Plug-ins:
          AdobePDFViewer.plugin
          DivXBrowserPlugin.plugin
          Flash Player.plugin
          FlashPlayer-10.6.plugin
          Flip4Mac WMV Plugin.plugin
          Google Earth Web Plug-in.plugin
          googletalkbrowserplugin.plugin
          iPhotoPhotocast.plugin
          JavaAppletPlugin.plugin
          npgtpo3dautoplugin.plugin
          OfficeLiveBrowserPlugin.plugin
          OVSHelper.plugin
          QuickTime Plugin.plugin
          Silverlight.plugin
User Internet Plug-ins:
          Anystream.plugin
          CitrixOnlineWebDeploymentPlugin.plugin
          fbplugin_1_0_3.plugin
          Picasa.plugin
          WebEx64.plugin
Bad Fonts:
          None
Top Processes by CPU:
               3%          DisplayLinkManager
               3%          WindowServer
               2%          EtreCheck
               1%          DashboardClient
               1%          fontd
               1%          SystemUIServer
               0%          Finder
               0%          Flux
               0%          mds
               0%          zdd
Top Processes by Memory:
          262 MB          mds
          131 MB          WindowServer
          98 MB          Dock
          49 MB          com.apple.dock.extra
          49 MB          DisplayLinkManager
          49 MB          mysqld
          49 MB          Finder
          49 MB          Google
          33 MB          java
          33 MB          coresymbolicationd

Uninstall CleanMyMac and reinstall the OS. You've likely "cleaned" something you should not have.
If CleanMyMac removes uneeded languages from applications, reinstall the applications. Some do not function well when you remove them.
You also have a ton of other third-party stuff which could be causing the problem.
ChmodBPF - Path: /Library/StartupItems/ChmodBPF
          HWNetMgr - Path: /Library/StartupItems/HWNetMgr
          HWPortDetect - Path: /Library/StartupItems/HWPortDetect
          MySQLCOM - Path: /Library/StartupItems/MySQLCOM
          VirtualBox - Path: /Library/StartupItems/VirtualBox
          ZendServer_init - Path: /Library/StartupItems/ZendServer_init
Launch Daemons:
                 [loaded] com.adobe.fpsaud.plist
                 [loaded] com.displaylink.usbnivolistener.plist
                 [loaded] com.fitbit.fitbitd.plist
                 [loaded] com.github.GitHub.GHInstallCLI.plist
Launch Agents:
                 [loaded] com.adobe.CS5ServiceManager.plist
                 [loaded] com.displaylink.useragent.plist
User Launch Agents:
                 [loaded] com.facebook.videochat.sanford.plist
                 [loaded] com.google.GoogleContactSyncAgent.plist
                 [loaded] com.hp.printerAgent.plist
                 [loaded] com.macpaw.CleanMyMac.helperTool.plist
                 [loaded] com.macpaw.CleanMyMac.trashSizeWatcher.plist
                 [loaded] com.macpaw.CleanMyMac.volumeWatcher.plist

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