How does the Mac App Store detect what it believes to be installed?

I had a trial for Transmit on my machine prior to purchasing it on MAS.
Despite the fact I have it showing as purchased in the App Store app, I can't install it as it also believes it to be installed. Searching for files containing the name Transmit returns no results anywhere on my drive.
The trial copy is gone now, I removed the plists and other stuff too in the hope MAS would detect its absence, it doesn't.
Any tips/pointers on how I can install my software? I spoke to Panic directly, they're insistent the fault lies with Apple.
TIA :-)

What version of Mac OS X Snow Leopard is installed on your Mac? You are describing misbehavior of the MAS that was in the first version that was installed with Mac OS X 10.6.6. The misbehavior of listing apps as installed that were not acquired through the MAS was corrected with the MAS installed by 10.6.7. We now are at 10.6.8 with the newest version of the MAS.

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