How to create HD H.264 Clips

Hey, can anyone walk me through how to make a HD quicktime clip using the H.264 codec?
I have a HDTV Capture / Tuner card and have captured some HD video clips. Such as the Wreckers singing Leave the Pieces on The Tonight Show with Jay Leno Monday Night.
Using my HD software, I have extractive the native mpeg file from the transport stream. However, I'm having trouble playing it back in quicktime/itunes. Video works fine, but there is no audio!
here is the file details from the native hd mpeg.
Audio [AC-3]
Video: MPEG2 Video 1920x1080 29.97fps 45000Kbps [Video]
I have quicktime 7.0.4 Pro and the MPEG 2 Component.
I want to convert the MPEG to the H.264 Codec for better file size, and better performance and playback in itunes.
If someone could explain the process to me of what I need to do to create this mpeg clip as a H.264 Clip I would greatly appreciate it. Thanks=)

QuickTime cannot play MPEG-2 files with AC3 audio
(it's mentioned in the FAQ
). I believe you can use MPEG Streamclip (freeware) to convert the
track, both video and audio, to a format that
QuickTime can import and then export, but I'm not
certain, not having used it to convert any AC3.
Probably someone else here can tell you for sure, or
suggest an alternative.
What format do you or any one else suggest converting to first that would not lose any quality from the video?

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[Hide]
Error Summary
While processing the current request, an exception occured which could not be handled by the application or the framework.
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System Environment
Client
Web Dynpro Client Type HTML Client
User agent Mozilla/4.0 (compatible; MSIE 6.0; Windows NT 5.1; SV1)
Version null
DOM version null
Client Type msie6
Client Type Profile ie6
ActiveX enabled
Cookies enabled
Frames enabled
Java Applets enabled
JavaScript enabled
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VB Script enabled
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Web Dynpro Runtime Vendor: SAP, build ID: 7.0009.20060804145649.0000 (release=645_VAL_REL, buildtime=2006-08-26:14:41:58[UTC], changelist=413534, host=pwdfm101), build date: Thu Feb 15 10:23:57 IST 2007
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Java VM Java HotSpot(TM) Server VM, version:1.4.2_13-b06, vendor: Sun Microsystems Inc.
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local/TravelRequest
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java.lang.NullPointerException
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