How to customize mavericks' mac osx server apache configuration?

I have installed Mac OSX Mavericks Server and I would like to add some features to the Apache Server (gitolite, redmine, etc.) I've started with updating the httpd_server_app.conf file in/Library/Server/Web/Config/apache2 but unfortunately it has been overwritten by the server to its default. Maybe because I've updated something in the UI, or an update occurred... Anyway, I would like to know how can I update the configuration file in a permanent and persistent way, and still benefit the OSX Server UI and/or updates...
I've probably missed the big : "Put your own things here:" label...
PS: By the way, I wish to modify some of the current configuration, not only adding things...

If you scroll down through the standard httpd_server_app.conf file you will eventually find a section full of include options. (Some of which are commented out.)
One of these enabled include options is for /Library/Server/Web/Config/apache2/other/*.conf
The implication of this is that if you put your own httpd.conf file in the 'other' directory then any settings you put in it will be included in your Apache configuration and will not be over-written by Apple's Server.app software.

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