How to delete corrupted files on ipod classic

Somehow the "index" of files on my Ipod Classic HD got corrupted so none of my music, video, etc files showed up on the Ipod.  The library, and all the files, would display in Itunes so I followed the instructions and copied them over to an external HD.  Then, when I synced the Ipod, about 1/3 of my available HD on the Ipod shows up as yellow in the space available indicator.  Fortunately I had enough capacity to re-sync....just with very little free space on the HD afterward
My question is:
Should I reset the Ipod and then copy the library media folder from the external HD back to my PC?....and then sync?  Will that get rid of the corrupted files so I regain the capacity on the Ipod HD?
Thanks for any help

Hi arakis,
Welcome to the Apple Support Communities!
In this situation I would restore your iPod back to factory settings and then sync the music back onto it. It shouldn’t matter if the music is located on the computer hard drive or an external hard drive, as long as the iTunes Media Folder is pointed to the correct location to access the music from iTunes. The first article below explains the process of restoring your iPod back to factory settings and the second article shows the location (and how to change the location) of the iTunes Media Folder.
Restoring iPod to factory settings
http://support.apple.com/kb/HT1339
iTunes for Windows: Moving your iTunes Media folder
http://support.apple.com/kb/HT1364
Have a great day,
Joe

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