How to force Jdeveloper to preserve existing sources directory structure?

Hi all,
I have JDeveloper 9.0.3.4 which I have to use.
I tried to import to project from existing sources and I tried to keep existing sources
directory structure by selection option "Scan source paths to determine project contents" which should (according to documentation) preserve existing directory structure and show it in the Navigator.
But instead I get always (Jdev default?) directory structure:
Sources
HTML Sources
Miscelaneous Files
I changed default settings for Input path in project settings and for default project settings but still I get this Jdev structure.
Is there a way to force JDeveloper to preserve the directory structure of sources it imports from?
Many thanks,
Mile

I'd like to be able to specify the default project directory structure in 10g as well. For example I would like to have under the project root:
build.xml
src\
generatedsrc\
config\
resources\
build\
deploy\
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