How to re-sync applications and games?

Well, oh help! I had so many trouble after installing iTunes 8. For months everything went well. The family has an iPod touch 16 GB, an iPod Classic 160 GB and an iPod Video 80 GB. With MultiTunes I used different Libraries and everything went well.
I have a Mac Pro Quad-Core with 4 internal hard disks. For months I placed my iTunes folder (150 GB!!) on another internal disk than my startup disk. After installing iTunes 8 everything went wrong. I received the 13005 error and after I managed to start up iTunes, the program began to copy the whole library to my startup disk. Ow no! I forced iTunes to stop and everything crashed. Thank you Apple!
First I lost all my libraries, also the libraries of MultiTunes. Further I didn’t get permission to read my own folders and many tracks in iTunes 8 sounds choppy and scratchy. So far, so good. I tried to revert to iTunes 7, but my iPod touch was already updated for iTunes 8. After searching in your discussions (searching for hours and to little help) en some hacking in my own computer I restored (imported) a sort of library for my iPod touch. But now my purchased music has disappeared, en none of my many (payed!) applications are visible to sync.
All of these applications are in ~/music/itunes/Mobile Applications/ but I don’t know how to use them. Some of the applications are on my iPod touch, but I don’t know how to back up them for further use.
With the iPods classic and video it’s the same. The games are on the iPods, and all games are visible in ~/music/itunes/iPod Games, but I can’t see them anymore in the iPods to sync.
Please, how to restore this awfull mess?

You haven't received a response or an answer. I have a similar question. I want to transfer my iTunes library from my PC at home to a 2nd PC laptop at my office. 

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