How to replace audio in existing edit?

I've got some edited footage that I want to improve the audio for by processing in Adobe Audition. In the future, I will pre-process all my clips and then perform the edit, but I don't have the luxury of that with this project. I know I can edit the audio clips in Audition with the right-click option and the audio gets replaced, but that causes each edit to be clipped at both ends, whereas the original clip was from a larger clip and dropped in the timeline with in/out points. The difference being that I can cross-fade the original edit from shot to shot. With an Audition replaced edit, the ends are clipped and you can't do that.
So, my question is whether or not there is some other method of processing the audio in external applications and replacing them in the existing edit without disturbing the edit?

Tom
To answer your original question, I know of now easy way of processing your clips and replacing the existing ones already edited.
If I have this right you have your sequence fully edited?
There is a workaround, messy and time consuming but it will not spoil the video element of the sequence.
Process: -
Drag the audio for each clip so that it is on a track with space at either end of it.
Unlink each clip.
For every audio clip extend each audio's head and tail
Then use the edit in Audition link
The clips are individually processed
Then you can go back adjust the head and tail to what you want and fade out and in as you wish.
I'd manually fade each clip rather than add an audio transition
Take care not to alter the video clips at any time or you will go out of sync
Hope this helps
Col

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