How to separate left and right audio channels?

I've imported some AVCHD footage that had audio recorded separately to each channel, left and right.  When I put a clip in my timeline, I can separate the audio tracks, but I can't edit them individually.  When I bring down the level to 0db on one track and play the clip, the audio meter still shows equal levels on both left and right channels.  Any advice?
Second question - I transcoded some AVCHD footage to MP4 and can't figure out if the audio tracks remain separte after the transcoding.  I used Free MTS M2TS Converter to do the transcoding.  While I can choose 'dual mono" for an AVCHD clip, I do not have that same option for the MP4 clip.  It offers me "6 mono" but not dual mono. Any advice?
My concern is that when I provide my clients with raw MP4 footage with right and left audio recorded separately, that they'll be able to edit each track individually. 
Thanks!

Thanks Tom.  I recorded 2-channel audio, not 5.1 surround.  Six mono was only an option on the MP4 clip.  I did change the channel configuration from stereo to dual mono on the AVCHD clip, but I still wasn't able to edit the audio independently.  Even when I mute one track, the audio meter still shows equal left and right levels.

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