How to transfer selected apps and movies to new iPad?

I just received my iPad 3, and I would like to transfer some, but not all, of my apps and videos from my iPad 1.
I'm pretty confused as to the meaning of the Apps tab in iTunes. There is a list of apps to the left. Is this a list of all the apps that are "stored" in iTunes, whether or not they are on my iPad (or iPhone)? As far as I can tell, all those that are checked are also on my iPad. But there are some that are unchecked that are on my iPad.
Then there are "screenshots" of the pages of an iPad to the right. Generally, the layout of the apps on these screens match those on my iPad, but there is one app on the screenshot that's not on my iPad.
If I were to plug my new iPad in now and restore from this backup, what apps would move to the new iPad? How can I control those? Basically I would like to delete a lot of unsued apps from my iPad without losing them forever.
Same kinds of questions with videos.

The apps that have checkmarks next to the names are the apps that are selected to sync.
Those screenshots that you see are all of the home screens on the iPad and why you see an app on the screenshot that is not on the iPad does not make sense. If you see it on one of those screenshots - it should be on the iPad.
Anyway - simply select all of the items that you want to sync to the new iPad. Click on the boxes next to the names to select them. Deselect apps the same way - click on the boxes to remove the checkmarks.
You can pick and choose all of the content in each tab in iTunes - apps, music, photos. books - whatever - you can control what it syncs by selecting and selecting. Videos included. All of these apps that have checkmarks next the boxes will sync to my iPad.
This is how you select the movies that you want to sync.
All of the content that is checked in iTunes is what would sync - but that is not what would be restored from the backup. The backup contains all of your app data and app settings, the device settings, safari history and bookmarks, contacts, calendar entries, camera roll - and so on. The backup does not contain your media - you still have to sync that from iTunes.

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