HT1386 "Updating to iOS 6.1.5 will delete all of the apps and media..."  Why?

My daughter has a 4th gen ipod touch, still on iOS 4.3.5. It wasn't updated for such a long time because I had a space shortage on the computer on which it was always updated.  I've recently increased the size of C: so now I could proceed to back up all the kids' ipods and bring them up to the latest OS.
I backed it up and Synced onto the computer that it has always been backed up to. When I try to update it, it gives me this warning:
"Updating to iOS 6.1.5 will delete all of the apps and media, including iTunes Store purcahses. on your iPod touch.  To preserve your content. apply this update on the computer where you sync apps. music. videos. and photos."
This *really is* the computer on which all the backups and syncs had been done, but I think that I may have corrupted the apple files when I copied the image of the old C: drive onto the new hard disk.
The other two kids' ipod touches updated without any problems.  This third one, however has the warning above.
How do I fix this problem?
By the way: Quad core PC with 4GB of RAM, 64-bit Windows 7, and iTunes 11.1.4.62.
Thanks.

Do the followings to not lose anything. When you restore from backup as the article says, the iPod will also be updated
Syncing to a "New" Computer or replacing a "crashed" Hard Drive: Apple Support Communities

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