HT3231 trouble migrating certificates. Migration assistant did not migrate them

There are two Problems.
1. Migration assistant while migrating somehow did not migrate certificates. Im not sure if all are not migrated or this specific digital certificate for my identity issues by a legitimate CA
2. When I try to manually export and later import, these Certificates and keys, they still don't work.
Here is what I'm doing
- I just replaced an SSD in place of HHD (was called MacintoshHD) where OSX (mountain Lion) was installed. I ofcourse created a recovery disk / USB and later on re-installed OSX on the new SSD through Recovery
- next I used migration assistant to migrate my old user and files etc.
- all seemed well, until, I landed on a local website, where the login is through my digital certificate. This certificate was missing. Seems migration assitant did not do its job well.

Quit mail.
Goto ~/Library/Mail/V2/MailData
Delete the follow
Launch mail, it will re-import those files.

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