HT4863 iCloud Mail is showing incorrect storage capacity

My Mailbox is currently showing 3.1 GB capacity, and is causing huge trouble in my iCloud backup and operations in several of my iDevices including my mac.
When I open my iCloud account, I've ensured I deleted majority all of my previous email and is left with less than 1 MB worth of emails. I've also emptied my trash bin and cleared both Junk Folder and Sent Items.
Even after all the clean-up the email capacity never moved and remained the same?
Is there a bug?
Can I just delete this email account in iCloud and re-create it to avoid this HUGE 3.1 GB it is misreporting?

You only have 56.6 GB available to you. The difference between that and the 64 GB advertised capacity is taken up by:
The operating system since you can't use that for storage
and how GB is advertised and used/reported by the operating system. See:
How OS X and iOS report storage capacity - Apple Support
The update did not change anything except likely reducing the capacity by 10 or so MB since update typically add things and thus takes more storage for the operating system

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