I am so screwed! In need of help ASAP!

I switched out my old HD for a new 500GB HD. Cloned it using SuperDuper, upgraded to Leopard from Tiger on the new HD and updated it. I then wanted to change my home user or short name and followed these instructions:
http://support.apple.com/kb/HT1428
Followed all the steps until number 8. I realized that it's more accounts and so I deleted the newly created account. Logged off from root, logged in my usual Admin user and poof, all files are gone and it's just like a fresh new installed of Leopard.
I booted up using my old HD in my enclosure, reformatted the new HD. I then used SuperDuper, Carbon Copy and Disk Utility to clone again but all failed due to errors. I found the problem, applications missing in my Application folder, the file is there but the icon is invisible. When I tried deleting it, it stated that there's an error and could not be deleted -43. I used Disk Utility and repaired the old HD, repaired failed. I then restart and try to boot again using the old HD, and now, I can't boot anymore and the laptop just shuts down itself.
THIS IS RIDICULOUS. These are all the steps I've listed and I don't know how to continue!
Please help!

I'm guessing you didn't prep your new drive. Do the following (you will need to boot from your external drive:)
Extended Hard Drive Preparation
1. Open Disk Utility in your Utilities folder.
2. After DU loads select your hard drive (this is the entry with the mfgr.'s ID and size) from the left side list. Note the SMART status of the drive in DU's status area. If it does not say "Verified" then the drive is failing or has failed and will need replacing. SMART info will not be reported on external drives. Otherwise, click on the Partition tab in the DU main window.
3. Set the number of partitions from the drop down menu to one. Set the format type to Mac OS Extended (Journaled.) Click on the Options button, set the partition scheme to GUID (only required for Intel Macs) then click on the OK button. Click on the Partition button and wait until the process has completed.
4. Select the volume you just created (this is the sub-entry under the drive entry) from the left side list. Click on the Erase tab in the DU main window.
5. Set the format type to Mac OS Extended (Journaled.) Click on the Options button, check the button for Zero Data and click on OK to return to the Erase window.
6. Click on the Erase button. The format process can take up to several hours depending upon the drive size.
After formatting has completed quit DU. Now use SuperDuper! or your favorite cloning utility to clone your system from the external drive to the new internal drive.
If you need to change your short name this should help: Macworld | Changing the short username in Leopard.

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      Hugin: Version: 2011.4.0 - SDK 10.4
      /Applications/Hugin/Hugin.app
      Keynote: Version: 5.3 - SDK 10.5
      /Applications/iWork '09/Keynote.app
      Microsoft Alerts Daemon: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Alerts Daemon.app
      Microsoft AutoUpdate: Version: 2.3.6 - SDK 10.4
      /Library/Application Support/Microsoft/MAU2.0/Microsoft AutoUpdate.app
      Microsoft Chart Converter: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Chart Converter.app
      Microsoft Clip Gallery: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Clip Gallery.app
      Microsoft Database Daemon: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Database Daemon.app
      Microsoft Database Utility: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Database Utility.app
      Microsoft Document Connection: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Microsoft Document Connection.app
      Microsoft Error Reporting: Version: 2.2.9 - SDK 10.4
      /Library/Application Support/Microsoft/MERP2.0/Microsoft Error Reporting.app
      Microsoft Excel: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Microsoft Excel.app
      Microsoft Graph: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Graph.app
      Microsoft Language Register: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Additional Tools/Microsoft Language Register/Microsoft Language Register.app
      Microsoft Office Reminders: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Office Reminders.app
      Microsoft Outlook: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Microsoft Outlook.app
      Microsoft PowerPoint: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Microsoft PowerPoint.app
      Microsoft Ship Asserts: Version: 1.1.4 - SDK 10.4
      /Library/Application Support/Microsoft/MERP2.0/Microsoft Ship Asserts.app
      Microsoft Upload Center: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Upload Center.app
      Microsoft Word: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Microsoft Word.app
      My Day: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/My Day.app
      Open XML for Excel: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Open XML for Excel.app
      PTBatcherGUI: Version: 2011.4.0 - SDK 10.4
      /Applications/Hugin/PTBatcherGUI.app
      Picasa: Version: 3.9.16 - SDK 10.4
      /Applications/Picasa.app
      SLLauncher: Version: 1.0 - SDK 10.5
      /Library/Application Support/Microsoft/Silverlight/OutOfBrowser/SLLauncher.app
      Solver: Version: 1.0 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Add-Ins/Solver.app
      Spotify: Version: 0.8.4.107.g4fa0003f - SDK 10.5
      /Applications/Spotify.app
      SyncServicesAgent: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/SyncServicesAgent.app
      calibrate_lens_gui: Version: 2011.4.0 - SDK 10.4
      /Applications/Hugin/calibrate_lens_gui.app
    Time Machine:
      Skip System Files: NO
      Mobile backups: ON
      Auto backup: YES
      Volumes being backed up:
      Hurricane: Disk size: 697.84 GB Disk used: 457.78 GB
      Destinations:
      Gasolina [Local] (Last used)
      Total size: 3 
      Total number of backups: 18
      Oldest backup: 2013-07-09 19:11:24 +0000
      Last backup: 2013-12-13 19:35:36 +0000
      Size of backup disk: Excellent
      Backup size 3  > (Disk size 697.84 GB X 3)
      Time Machine details may not be accurate.
      All volumes being backed up may not be listed.
    Top Processes by CPU:
          22% storeagent
          2% WindowServer
          1% backupd
          1% Google Chrome
          1% EtreCheck
    Top Processes by Memory:
      119 MB Google Chrome
      102 MB Google Chrome Helper
      82 MB mds_stores
      57 MB Finder
      33 MB WindowServer
    Virtual Memory Statistics:
      45 MB Free RAM
      792 MB Active RAM
      748 MB Inactive RAM
      1.06 GB Wired RAM
      37.63 GB Page-ins
      1.98 GB Page-outs

    Here’s your report with some comments:
    Hardware Information:
      MacBook Pro (13-inch, Late 2011)
      MacBook Pro - model: MacBookPro8,1
      1 2.8 GHz Intel Core i7 CPU: 2 cores
      4 GB RAM
    Video Information:
      Intel HD Graphics 3000 - VRAM: 384 MB
    Audio Plug-ins:
      BluetoothAudioPlugIn: Version: 1.0 - SDK 10.9
      AirPlay: Version: 1.9 - SDK 10.9
      AppleAVBAudio: Version: 2.0.0 - SDK 10.9
      iSightAudio: Version: 7.7.3 - SDK 10.9
    System Software:
      OS X 10.9 (13A603) - Uptime: 6 days 4:6:6
    Disk Information:
      TOSHIBA MK7559GSXF disk0 : (750.16 GB)
      EFI (disk0s1) <not mounted>: 209.7 MB
      Hurricane (disk0s2) /: 749.3 GB (257.76 GB free)
      Recovery HD (disk0s3) <not mounted>: 650 MB
      MATSHITADVD-R   UJ-8A8
    USB Information:
      Western Digital My Book 1148 3 TB    WD drives are one of the worst things that can happen to a mac. They have software on the drive and also in the firmware of the drive enclosure that is incompatible with Mavericks. The software that they also want you to install on your mac (to run the drive with the shitware on it that is incompatible with Mavericks) is also incompatible with Mavericks. The best thing to do with this drive is to open it and remove the hard drive and put it into a new (non-WD) enclosure. Then smash the WD enclosure into little bits with a sledgehammer and mail it back to WD.
      EFI (disk4s1) <not mounted>: 209.7 MB
      disk4s2 (disk4s2) <not mounted>: 3 TB
      Boot OS X (disk4s3) <not mounted>: 134.2 MB
      Apple Computer, Inc. IR Receiver
      Apple Inc. FaceTime HD Camera (Built-in)
      Memorex TRAVELDRIVE 005B 16.01 GB
      EFI (disk2s1) <not mounted>: 209.7 MB
      Untitled (disk2s2) /Volumes/Untitled: 15.67 GB (15.63 GB free)
      Apple Inc. Apple Internal Keyboard / Trackpad
      Apple Inc. BRCM2070 Hub
      Apple Inc. Bluetooth USB Host Controller
    FireWire Information:
    Thunderbolt Information:
      Apple Inc. thunderbolt_bus
    Kernel Extensions:
    com.wdc.driver.USB_64HP (1.0.0 - SDK 10.6)     This would be part of the shitware that you installed from WD. I would  uninstall the WD application that installs this driver. If the driver is still there after that, I'd look for the extension in /System/Library/Extensions and delete it from there. This may have damaged your kernel, though. If your performance is not improved after removing the WD app and this extension, you should probably back up your documents, erase your HD, and do a clean reinstall of Mavericks.
    Problem System Launch Daemons:
    [failed] com.apple.AOSNotificationOSX.plist    
    [failed] com.apple.installd.plist
      [failed] com.apple.softwareupdated.plist
      [failed] com.apple.wdhelper.plist    These four are all apple software. I would try repairing your hard drive: Boot into your recovery partition (restart, hold down ⌘R until you see the Apple logo), and use Disk Utility to repair your hard drive. Repair permissions too while you're there. OS X: About OS X Recovery . Then restart, reassess your mac’s performance, and rerun Etrecheck. If that doesn’t work, I’d reinstall Mavericks over your current installation. If that doesn’t work, I’d do a clean install.
    Problem System Launch Agents:
    Launch Daemons:
      [loaded] com.adobe.fpsaud.plist
      [loaded] com.adobe.versioncueCS3.plist
      [loaded] com.barebones.textwrangler.plist 
      [loaded] com.cisco.anyconnect.vpnagentd.plist
      [loaded] com.google.keystone.daemon.plist    spyware from google
      [loaded] com.microsoft.office.licensing.helper.plist
      [loaded] com.oracle.java.Helper-Tool.plist
      [loaded] org.macosforge.xquartz.privileged_startx.plist
    Launch Agents:
      [loaded] com.cisco.anyconnect.gui.plist
    [loaded] com.google.keystone.agent.plist
      [loaded] com.oracle.java.Java-Updater.plist
      [loaded] org.macosforge.xquartz.startx.plist
    User Launch Agents:
    [failed] com.apple.CSConfigDotMacCert-[redacted]@me.com-SharedServices.Agent.plist   see the suggestions above.
    [loaded] com.google.Chrome.framework.plist    This is why I prefer Safari. It doesn’t install all this extra junk.
    User Login Items:
      Flux
      iTunesHelper
    Google Drive   Last I heard Google drive was incompatible with Mavericks.
      Google Chrome
      AdobeResourceSynchronizer
    3rd Party Preference Panes:
      Flash Player
      Java
    Internet Plug-ins::   Way too many of these. If you have poor browser performance, get rid of these, and then only reinstall ones you absolutely need, and make sure they are mavericks compatible and up-to-date.
      o1dbrowserplugin: Version: 4.9.1.16010
      Default Browser: Version: 537 - SDK 10.9
      Flip4Mac WMV Plugin: Version: 2.2.0.49
      Loki: Version: 3.0
      net.juniper.DSSafariExtensions: Version: (null)
      RealPlayer Plugin: Version: Unknown
      FlashPlayer-10.6: Version: 11.9.900.170 - SDK 10.6
      DivXBrowserPlugin: Version: 1.3
      Silverlight: Version: 5.1.20513.0 - SDK 10.6
      Flash Player: Version: 11.9.900.170 - SDK 10.6
      AmazonMP3DownloaderPlugin: Version: Unknown
      googletalkbrowserplugin: Version: 4.9.1.16010
      npgtpo3dautoplugin: Version: 0.1.44.29 - SDK 10.5
      iPhotoPhotocast: Version: 6.0
      QuickTime Plugin: Version: 7.7.3
      SharePointBrowserPlugin: Version: 14.3.9 - SDK 10.6
      JavaAppletPlugin: Version: Java 7 Update 45
    User Internet Plug-ins::
      Picasa: Version: 1.0
      Google Earth Web Plug-in: Version: 7.1
    Bad Fonts:
      None
    Old applications:
      Audacity: Version: 1.3.14.0 - SDK 10.4
      /Applications/Audacity/Audacity.app
      Hugin: Version: 2011.4.0 - SDK 10.4
      /Applications/Hugin/Hugin.app
      Keynote: Version: 5.3 - SDK 10.5
      /Applications/iWork '09/Keynote.app
      Microsoft Alerts Daemon: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Alerts Daemon.app
      Microsoft AutoUpdate: Version: 2.3.6 - SDK 10.4
      /Library/Application Support/Microsoft/MAU2.0/Microsoft AutoUpdate.app
      Microsoft Chart Converter: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Chart Converter.app
      Microsoft Clip Gallery: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Clip Gallery.app
      Microsoft Database Daemon: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Database Daemon.app
      Microsoft Database Utility: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Database Utility.app
      Microsoft Document Connection: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Microsoft Document Connection.app
      Microsoft Error Reporting: Version: 2.2.9 - SDK 10.4
      /Library/Application Support/Microsoft/MERP2.0/Microsoft Error Reporting.app
      Microsoft Excel: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Microsoft Excel.app
      Microsoft Graph: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Graph.app
      Microsoft Language Register: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Additional Tools/Microsoft Language Register/Microsoft Language Register.app
      Microsoft Office Reminders: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Office Reminders.app
      Microsoft Outlook: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Microsoft Outlook.app
      Microsoft PowerPoint: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Microsoft PowerPoint.app
      Microsoft Ship Asserts: Version: 1.1.4 - SDK 10.4
      /Library/Application Support/Microsoft/MERP2.0/Microsoft Ship Asserts.app
      Microsoft Upload Center: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Microsoft Upload Center.app
      Microsoft Word: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Microsoft Word.app
      My Day: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/My Day.app
      Open XML for Excel: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Open XML for Excel.app
      PTBatcherGUI: Version: 2011.4.0 - SDK 10.4
      /Applications/Hugin/PTBatcherGUI.app
      Picasa: Version: 3.9.16 - SDK 10.4
      /Applications/Picasa.app
      SLLauncher: Version: 1.0 - SDK 10.5
      /Library/Application Support/Microsoft/Silverlight/OutOfBrowser/SLLauncher.app
      Solver: Version: 1.0 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/Add-Ins/Solver.app
      Spotify: Version: 0.8.4.107.g4fa0003f - SDK 10.5
      /Applications/Spotify.app
      SyncServicesAgent: Version: 14.3.9 - SDK 10.5
      /Applications/Microsoft Office 2011/Office/SyncServicesAgent.app
      calibrate_lens_gui: Version: 2011.4.0 - SDK 10.4
      /Applications/Hugin/calibrate_lens_gui.app
    Time Machine:
      Skip System Files: NO
      Mobile backups: ON
      Auto backup: YES
      Volumes being backed up:
      Hurricane: Disk size: 697.84 GB Disk used: 457.78 GB
      Destinations:
      Gasolina [Local] (Last used)
      Total size: 3
      Total number of backups: 18
      Oldest backup: 2013-07-09 19:11:24 +0000
      Last backup: 2013-12-13 19:35:36 +0000
      Size of backup disk: Excellent
      Backup size 3  > (Disk size 697.84 GB X 3)
      Time Machine details may not be accurate.
      All volumes being backed up may not be listed.
    Top Processes by CPU:
          22% storeagent
          2% WindowServer
          1% backupd
          1% Google Chrome
          1% EtreCheck
    Top Processes by Memory:
      119 MB Google Chrome
      102 MB Google Chrome Helper
      82 MB mds_stores
      57 MB Finder
      33 MB WindowServer
    Virtual Memory Statistics:
      45 MB Free RAM
      792 MB Active RAM
      748 MB Inactive RAM
      1.06 GB Wired RAM
      37.63 GB Page-ins
      1.98 GB Page-outs  This is the highest amount of page-outs I have ever seen. I'd get rid of Chrome and Google Drive. Dropbox works fine and doesn't screw up my mac.

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