I can preview but not render?  Black frames?

I've taken some footage from an HDV camcorder...I did some editing in Premiere, then imported the timeline into After Effects CS3 (latest version). I had no problems when I was working on time remapping and color correction...RAM previews worked fine.
Now, when I try to export to any format (Quick Time, AVI Uncompressed, image sequence), After Effects will render a few frames just fine, then render a few frames as nothing but black (except for the stuff that's not the HDV video). The footage is being interpreted correctly, and I've tried every combination of that and the fields settings when exporting.
I don't understand why I can RAM preview and scrub through the timeline and see every frame just fine, but After Effects cannot render it to file.
Anyone have any ideas? I worked for days on this project...
Since I can scrub the timeline, is there a way to write a script to make After Effects go frame by frame, wait for the comp preview to render, then export THAT image as a PNG or something, since I know that works?
I'll never try to edit HDV again without some sort of intermediate, but is there any way to save THIS project?
Thanks for your help.

If this happens to anyone else, I found a workaround. It's slower than crap, but it works for now...until AE can deal with HDV footage better.
Like Mylenium said, trash multi-core rendering, that was an important step. On my quad core machine, I threw about 80% of the RAM to the cache, and had it render WITHOUT OpenGL as a PNG image sequence.
After Effects halted 5 or 6 times during the 4,000 frame render. It would usually have a bizarre error, then Windows would complain about virtual memory. I would just dismiss the error, reload AE, and begin rendering from the last good frame. It took a few hours, but I got all the frames, then rendered the image sequence to a movie.
Tedious and frustrating, but it worked. Hope this helps someone else in the future.

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