I can't save system preferences

I am trying to save the Date & Time preferences to have the date and time displayed in the menu bar. I go into system preferences/date $ time, make sure it is unlocked, and click the checkbox to 'show the date and time'. However, the setting does not save and always reverts back to unchecked. I am the administrator of the computer however, all of the files in the system folder, including the preference pane files are read-only. Every user on the machine has the same issue, even if I create a new user. Any idea what is going on? Is it possible that the ability to save changes to the system preferences has been disabled? I have already run the repair disk permissions but that did not help.

I tried deleting that file from the system folder but when I do that and reboot it does not get recreated.
AHA, good sleuthing, we have a deeper problem, may I suggest...
Could be many things, we should start with this...
"Try Disk Utility
1. Insert the Mac OS X Install disc that came with your computer, then restart the computer while holding the C key.
2. When your computer finishes starting up from the disc, choose Disk Utility from the Installer menu. (In Mac OS X 10.4 or later, you must select your language first.)
*Important: Do not click Continue in the first screen of the Installer. If you do, you must restart from the disc again to access Disk Utility.*
3. Click the First Aid tab.
4. Click the disclosure triangle to the left of the hard drive icon to display the names of your hard disk volumes and partitions.
5. Select your Mac OS X volume.
6. Click Repair. Disk Utility checks and repairs the disk."
http://docs.info.apple.com/article.html?artnum=106214
Then Safe Boot from the HD, (holding Shift key down at bootup), run Disk Utility in Applications>Utilities, then highlight your drive, click on Repair Permissions, reboot.
The usual reason why updates fail or mess things up, is if Permissions are not fixed before & after every update, with a reboot... you may get a partial update when the installer finds it doesn't have Permissions to change one obscure little part of the OS, leaving you with a mix of OS versions.
Some people get away without Repairing Permissions for years, some for only days.
If Permissions are wrong before applying an update, you could get mixed OS versions, if Directory is the slightest messed up, who knows!
If many Permission are repaired, or any Directory errors are found, you may need to re-apply some the latest/biggest updates.

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