I changed drives and consolidated my library, but many files are missing

I recently changed my the hard drive on which my iTunes media were stored. I followed instructions on this page:
iTunes for Mac: Moving your iTunes Media folder
However, after consolidation I discovered that quite a lot of folders and files are missing from the new created file. The missing songs are still in my library, and when I try to play them, I get the exclamation mark and have to direct iTunes to the original files on the old hard drive.
I've restarted everything and tried to consolidate again and again, but the files remain missing.
What should I do?
All advice gratefully received.

I am not doing it in ITunes, but i did down load the song from ITunes.  I loaded the song on to my Nano, but in my menu selections it doesn't show the song or the artist in any search format.  However, when i plug in my nano to my PC I see the Nano library on my PC drive listings and that song and artist are there.  I can click on the song and it will play in Windows media on my work PC.  I did notice that the format for most all the songs in my library on my Nano are MPEG - 4 audio Files. 
Thanks for your help, Mel

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