I have a short 3d video with a separate black/white alpha pass, how can I use the alpha pass as a mask?

I have a short 3d video with a separate black/white alpha pass, how can I use the alpha pass as a mask? I want to add a heat wave distortion to the whole video but not on the alpha pass area. How do I set this up?

Track matte:
http://helpx.adobe.com/after-effects/using/alpha-channels-masks-mattes.html#track_mattes_a nd_traveling_mattes
Start here to learn After Effects:
http://adobe.ly/AE_basics

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