I have an Iphone OS 4.3.3 and need to update with a different library than the original.

I have an Iphone OS 4.3.3 and need to update. I have not done so since the first Itunes library used to setup my phone was done on a friend's computer and is not longer available for me. Loading to a different library requires me to erase the contents before updating. I have already come to terms with the disappointing reality of losing my media, however, will my text message history, phone contacts/numbers, notes saved in the basic built-in notes app or ANYTHING else be effected or wiped during this process? Does the backup function secure this data even though I'm using a different Library?
Hoping there's anyone with a promising answer to this concern.
Thanks in advance,
MS

App content will not be lost as long as you back up the phone to the computer you plan to restore it from. See this for advice on how to deal with your situation: Syncing to a "New" Computer or replacing a "crashed" Hard Drive

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