I have lost all the PDF I had in Ibook

I have lost all the PDF I had in Ibook

Had you done anything with the iPad e.g. updated the iOS version, deleted and reinstalled iBooks ? PDFs (and epubs) in the iBooks app aren't included in a backup (ibooks are redownloadable from the store whilst they remain in the store), have you got copies of them in your computer's iTunes library so that you can sync them back to your iPad ?
When connected to your computer's iTunes the File > Devices > Transfer Purchases menu option on iTunes should copy PDFs and/or epubs that are in the iBooks app over to your computer's iTunes library so that you have a copy of them for restoring/resyncing - had you done that when they were in the app ?

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