I have more than 60 apps on my iphone but only 30 showing on my itunes sync library. How can I upload all apps to the sync library?

When I try to sync my iphone I get this message that there are apps in the iphone that are not in the library.  It seems that if I sync I will loose those.  How can I make sure that all apps that I have downloaded on iphone are also in the itunes library.

From iTunes, File > Transfer Purchases.

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