I'm organising my Aperture library today and I'm going to go through my photos folder, import the images to Aperture and then delete the original folders. Just curious if deleting the source folders is a big no-no or not.

Topic title basically sums it up.

Alright. For my case was, my source files are inside the Document folders. Since importing the pictures into Aperture, deleting the source files/folders did not cause any problems with Aperture.
Whether it is a good idea or would depend on how comforatble you are with the idea in the first place. On one hand you can save up precious hard disk space, while on the other if the Aperture library gets corrupted, you might lose everything. Of course, having a backup of the Aperture library helps, as well as a time machine backup of it. On top of that you can also have an Aperture Vault to backup the library to a external drive.
In summary i think a reasonlable backup plan is just as important regardless of whether or not the source file is in which location. For my case, i only have the Aperture library as all of my source. A time machine backs up everything including my library, in addition to that, i also use Aperture Vault to back up to another external drive just in case.

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