I sorted 'Unsorted Bookmarks' and now there are 5 or more of each folder and bookmark

After Sorting my 'Unsorted Bookmarks', I now have 5 or more copies of each folder or bookmark.
How do I get rid of the excess copies without having to manually delete each one?

This can be a problem with the file places.sqlite that stores the bookmarks and the history.
* http://kb.mozillazine.org/Locked_or_damaged_places.sqlite

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