I think my macbook pro has some form of trojan

Question

Hello, I have a macbook pro and I think it has some sort of trojan (or something similar). I have been through many apple discussions and watched many youtube tutorials to try and fix my problem but nothing has work unfortunately.
The sympotms include:
Green links
when on a wep page a few random words on each site I visit become green and they have a double underline on them. These are links and redirect to other webpages and sometimes even without clicking or hovering over them a little pop up comes from them.
Pop Ups
There are many popups on any page I go on to. This is especially true for youtube and the google search page. However it does happen on most webpages where there will be ads on the page itself or other ads open up on new tabs or windows and ads have been popping up from the bottom right corner of the screen, similar to a notification.
I have uninstalled or possible software I can find and have most defintley uninstalled mackeeper. I have reset my safari in hopes of ridding these issues but that hasn't worked either. I scanned for viruses in a desperate attempt to find something but nothing was found. Pop ups have been blocked. I cant seem to find anything unusal in the programs or settings. I do know my way around a computer but however I am a somewhat novice when it comes to the more advanced things and I only bought my first mac in February (or March) this year.
I have tried everything I know of and everything I've found in order to fix this but it still isn't helping.
Any help would be much appreciated, thank you so much in advance

Answer 1

EtreCheck version: 1.9.11 (43) - report generated 24 May 2014 4:07:39 pm ACST
Hardware Information:
          MacBook Pro (Retina, 13-inch, Late 2013)
          MacBook Pro - model: MacBookPro11,1
          1 2.4 GHz Intel Core i5 CPU: 2 cores
          4 GB RAM
Video Information:
          Intel Iris - VRAM: (null)
System Software:
          OS X 10.9.3 (13D65) - Uptime: 0 days 1:20:19
Disk Information:
          APPLE SSD SD0128F disk0 : (121.33 GB)
                    EFI (disk0s1) <not mounted>: 209.7 MB
                    Macintosh HD (disk0s2) / [Startup]: 120.47 GB (48.47 GB free)
                    Recovery HD (disk0s3) <not mounted>: 650 MB
USB Information:
          Apple Internal Memory Card Reader
          Apple Inc. BRCM20702 Hub
                    Apple Inc. Bluetooth USB Host Controller
          Apple Inc. Apple Internal Keyboard / Trackpad
Thunderbolt Information:
          Apple Inc. thunderbolt_bus
Configuration files:
          /etc/sysctl.conf - Exists
Gatekeeper:
          Mac App Store and identified developers
Startup Items:
          HWNetMgr: Path: /Library/StartupItems/HWNetMgr
          HWPortDetect: Path: /Library/StartupItems/HWPortDetect
Launch Daemons:
          [loaded] com.adobe.fpsaud.plist Support
          [running] com.avg.Antivirus.infosd.plist Support
          [running] com.avg.Antivirus.services.plist Support
          [loaded] com.macpaw.CleanMyMac2.Agent.plist Support
          [loaded] com.microsoft.office.licensing.helper.plist Support
          [not loaded] com.vsearch.daemon.plist Support
          [running] com.vsearch.helper.plist Support
Launch Agents:
          [running] com.avg.Antivirus.gui.plist Support
          [running] com.vsearch.agent.plist Support
User Login Items:
          iTunesHelper
Internet Plug-ins:
          SharePointBrowserPlugin: Version: 14.2.0 - SDK 10.6 Support
          FlashPlayer-10.6: Version: 13.0.0.214 - SDK 10.6 Support
          Flash Player: Version: 13.0.0.214 - SDK 10.6 Support
          QuickTime Plugin: Version: 7.7.3
          JavaAppletPlugin: Version: Java 7 Update 55 Check version
          Default Browser: Version: 537 - SDK 10.9
Audio Plug-ins:
          BluetoothAudioPlugIn: Version: 1.0 - SDK 10.9
          AirPlay: Version: 2.0 - SDK 10.9
          AppleAVBAudio: Version: 203.2 - SDK 10.9
          iSightAudio: Version: 7.7.3 - SDK 10.9
iTunes Plug-ins:
          Quartz Composer Visualizer: Version: 1.4 - SDK 10.9
3rd Party Preference Panes:
          Flash Player  Support
Time Machine:
          Time Machine not configured!
Top Processes by CPU:
               4%          WindowServer
               3%          Google Chrome
               1%          fontd
               0%          com.apple.preference.network.remoteservice
               0%          configd
Top Processes by Memory:
          98 MB          Google Chrome Helper
          90 MB          Finder
          78 MB          Google Chrome
          57 MB          Safari
          53 MB          WindowServer
Virtual Memory Information:
          48 MB          Free RAM
          1.05 GB          Active RAM
          1.00 GB          Inactive RAM
          701 MB          Wired RAM
          6.04 GB          Page-ins
          166 MB          Page-outs