IBook app not able to restore

I upgraded to ios5 for my iPad1 yesterday...now i can't get my iBook purchases and ALL my PDF files back...where have they gone to??

Thanks so much for your reply...
Yup I'm in the iBooks app not the Newsstand app .
I only have one iTunes account.
Actually when I started the iBooks app after upgrading ti iOS 5,ALL my purchases of iBooks AND my PDF files were there then they began to disappear 1 by 1..and soon all that was left was am EMPTY iBook shelf !!!
I checked on my MBP but couldn't find any of them but when I went to the iTunes account and only the book purchases was found in the iCloud even though I didn't request the use of the iCloud facility.
Despite all that my PDF files are still missing...
Glad for your input...give me a shout if you have any advice...
Cheers!!!

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