Ibooks wont show my pdf files!!

Hello, I am using the latest itunes on Windows 7 and I have an iPad 2 with iOs7... Ive been trying manually add my pdf library to the iBooks app on my device trough iTunes, process that in the past was quite easy. The thing is that I can still do this, but this time the books would be on my device (or at least that is what see when I explore the content of my iPad through iTunes) but when i open the iBooks app: NOTHING!... it just doesnt show my pdf files even though I know they are there, Ive tried deleting them and adding them again, Ive also had the problem of iTunes freezing completely "syncing genius data - waiitng for items to copy"... does anyone know if these two issues are related? what can i do? is there a way to look for corrupyed files or something like that on ipad?... PLEASE HELP, I AM GOING NUTS!

I had the exact same problem.  I bought some PDF ebooks and they showed on the iBooks Mac app but not on my iPad or iPhone.  I looked in iTunes and I have select the books to sync on my iPad due to my iPad being filled up with tons of stuff.  Anyway the newer PDF ebooks were not there.  I tried stopping starting sync, sync over USB and various combinations of starting and stopping itunes and iBooks.
What finally worked is I removed the PDF ebooks from iBooks, renamed the PDF files and ensured I had the .pdf extension, readded to iBooks and then they appeared in iTunes for my iPad to select and then sync.  Hope that works for you as well.  I got this idea as someone mentioned a naming hint that was more related to the extension but that didn't work but when I deleted, changed the entire name and then readded to iBooks all good

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