Icloud not syncing app documents

I am using an app called MentalCase which uses iCloud to sync data between my Mac and my iOS devices.  It is only syncing part of the data.  The file is 45MB, but iCloud is only syncing 10.1MB of data for the application. 
I deleted the iCloud file (from System Pref : iCloud : Documents & Data : Manage) and toggled the iCloud setting in the app itself, but the file returned to iCloud in its 10.1 form again.  Is there any sort of limit to the amount of data a third party can store? 
Any advice?

I just retraced my steps, and the data is synced now.  I believe deleting the iCloud file and toggling the storage option in the app reset the data.
However, in the iCloud Documents & Data pane, it still shows the document is 10.1 MB (it's 45 MB, and all there).

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