Icon hidden behind Application icon on dock - OS X Maverick

I have this icon behind the Application icon on the dock and I cannot figure out what it is. It is not something on the desktop as I have moved the dock and can't see it, so it is definitely connected with the Application icon. I have deleted all downloads which could have been half done and I have removed an Alias I had in the Application folder. Now all the Applications appears as "Applications" in the "Kind" column when viewing in Finder.
Any ideas?

Do you mean the Applications icon on the right side of the dock?
It is the icons for your applications and they are stacked on top of each other.
The top icon will be the first app in your Applications folder and under that will be the next app in the Applications folder etc.
Depending on the size of the icons, you may see 3 or 4 icons on top of each other.
Here is mine.
The first few apps are 1Password, 1Password4, Adobe Reader and this shows those icons.

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