If I manage to get my music on this pc and sync to my ipad, will it erase data i have stored in apps or can i only sync music?

I am frustrated with getting old music onto my itunes from my ipad, so i can then get it onto my new 5s.  If i manage to find the old HD that has all my old non-itunes music on it, and put it on this pc that has no music on it, can i sync only the music, so that it doesn't erase all of my data from the ipad?

My music can be played in my iMac and iPad itunes, but not my iPhone4.
i did what you have suggested to unsync the music and then re-sync again. should i try to cancel all the music in the library and then restore them again. can it work? i dont want to bet coz reloading so much music is very trouble. 

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