Illustrator vector images loses layers when placed into InDesign

I have a illustrator image that I want to paste into InDesign - I have tried pasting and placing however it appears both ways do not paste all the image elements. See below - any ideas?
Selected all and copied in Illustrator:
Then, pasted (and placed) into InDesign - missing neck, shirt

Pasting Illy artwork is for very simple drawings. Complex shapes and objects may not coming into ID exactly the way you want.
Why aren’t you placing the graphic?

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hi Manish
thanks for the quick response. Unfortunately, I can't share the file. it would be against the TOS of the stock photo site from where I purchased it.
The only way I can prevent other layers from showing through this particular file is by duplicating it. So I'm guessing that the opacity is somehow being reduced. But no idea why, and when I click on the layer it says it is at full opacity, and normal blending. The ppacity remains at full when in Illustrator, so if I put another image behind this particular file then there is no problem. It is only when moving this file into PS that it becomes see through.
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Illustrator vector images loses layers when placed into InDesign

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