Import and replace contacts (NOT merge)

Today I woke up to find my iCloud contact information duplicated WITHIN THE CONTACTS.
What I had before:
John Smith
Home: +1 123 456 7890
Work: +1 945 678 9012
Private: [email protected]
What I have now:
John Smith
Home: +1 123 456 7890
Home: +1 945 678 9012
Work: +1 945 678 9012
Work: +1 123 456 7890
Private: [email protected]
Work: [email protected]
I have a vCard backup of my contacts database from a month ago with correct (non-duplicated data), but this backup is missing my most recently added 100 or so contacts.
Is there a way I can import this backup and have it overwrite (NOT MERGE with) existing contacts?

I have a question, are you sure that these cards are in the same account, it is possible that you have 2 accounts in Contacts, iCloud and On My Mac, and that you are in the All Contacts view. Select the Groups view on the View menu and see what you are seeing before deleting. It may be simpler than you think.

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