Imported quicktime files lose resolution when exported from FCE

I am having trouble with quicktime files losing resolution after I add titles and transitions to them in FCE.
I'm doing some video morphing so I use different software to create the quicktime files, and then I import them into FCE in order to add titles and transitions, and then I want to export again as quicktime files.
The problem is, when I export the completed movies from FCE, the quicktime file section of the movies ends up being a much lower resolution than when I had imported it. I am using all the same compression settings throughout: Sorenson 3, Best, Frame rate 15 fps. The movies are 1001x751 in size.
Any ideas on how to get the movies to come out as crisp and hi res as the original clips?
Thanks.
FCE 2.0.3   Mac OS X (10.4.5)  
FCE 2.0.3   Mac OS X (10.4.5)   Quicktime 7.0.4

Sorenson 3 is a web compression codec. You need to create your videos in DV NTSC at 720x480 at the 29.97fps. That the format that's specified in FCE.
All the best,
Tom

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