In disk utility, after an erase of my HD, it still shows used file space. How do I completely erase the HD?

My computer wouldn't boot past the white screen and after trying a few things, I was able to find the original installation CD, hold C while turning the computer on and get into disk utility. I tried running a repair on the HD and it said the disk could not be repaired. I tried restoring from a backup, but about 20 min into the installation, I got a message saying the installation couldn't be completed.
I decided to try and just completely erase the HD from disk utility then try the installation again. However, after I try erasing the HD, it still shows there is used space, six folders and two files.
The HD I'm trying to erase looks like it's a partition under something called "250.06 GB toshiba mk2555gsxf media". Should I try erasing there? I'm not super tech savvy and I'm nervous to do more damage.

From what you wrote, your disk may be altered or dying. Diskutility shall give you full report after testing disk integrity, but it seems you'll have to change your hdd pretty soon.
Anyway, what you see as "250.06GB ... Media" is your physical hdd. Macintosh HD or any name your hdd have under MacOS is just a partition on this hdd.  But MacOS needs others hidden partitions for EFI and recovery, for instance, which take some space even if you don't see it.
If you really want an install from scratch, you may click on the Media line displaying your hdd, go to erase tab and write another partition table. Afterward, create a single partition and installa MacOS. If your disk is dammaged, it won't repair it.

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