Inbox folders not being created from msf files

Last week, I noticed that my Inbox folder files weren't appearing in my profile. I posted a generalized question here: https://support.mozilla.org/en-US/questions/996903
The response I received didn't help that much. The folder I created appeared on the remote mailbox as empty folders.
My mail account is synced via IMAP to a remote Zimbra mail client using STARTTLS. I can view my Inbox. The other folders in my Inbox account are not visible. I can send and recieve messages from my INBOX.
When I select "Manage folder Subscriptions" In the account options, I can see the folders. When I select them, and click the "Subscribe" button, nothing happens.
Inspecting my IMAP directory, I see the following structure:
~/.thunderbird/13zr0oo0.default/ImapMail/mail.<zimbra_account>.com:
-rw-r--r-- 1 matthewe matthewe 1238 May 2 10:38 Archives.msf
-rw-r--r-- 1 matthewe matthewe 1235 May 2 10:38 Drafts.msf
-rw------- 1 matthewe matthewe 47500385 May 2 09:56 INBOX
-rw-r--r-- 1 matthewe matthewe 375885 May 2 10:36 INBOX.msf
-rw-r--r-- 1 matthewe matthewe 25 May 2 08:58 msgFilterRules.dat
-rw-r--r-- 1 matthewe matthewe 1233 May 2 10:38 Sent.msf
-rw-r--r-- 1 matthewe matthewe 0 May 2 10:38 site-errors.msf
-rw-r--r-- 1 matthewe matthewe 0 May 2 09:59 Templates.msf
-rw-r--r-- 1 matthewe matthewe 2275 May 2 10:33 Trash.msf
The msf files are created when I click the "Subscribe" button but subsequent Mail files containing the mail data are not (note that non-msf files exist only for "INBOX".)
Removing .msf files and restarting Thunderbird has no affect.
When I launch, the errors console reports the following three errors:
"Could not read chrome manifest 'file:///usr/lib/thunderbird/extensions/%7B972ce4c6-7e08-4474-a285-3208198ce6fd%7D/chrome.manifest'.
-- There is no chrome.manifest file in my filesystem under /usr/lib/thunderbird/extensions/{972ce4c6-7e08-4474-a285-3208198ce6fd}"
"While creating services from category 'profile-after-change', could not create service for entry 'Disk Space Watcher Service', contract ID '@mozilla.org/toolkit/disk-space-watcher;1'"
This is reported as https://bugzilla.mozilla.org/show_bug.cgi?id=883621 and has been resolved at https://bugzilla.mozilla.org/show_bug.cgi?id=895964 but my system still throws the error. (I have plenty of disk space. Permissions perhaps?)
[JavaScript Warning: "Calendar https://mail.zimbrahostedemail.com/home/matthewe@<zimbra_client>.com/Calendar has a dangling E-Mail identity configured."]
I'm not sure what that means.
I am using Thunderbird 24.5.0 on Ubuntu 13.10

Is your question about files not being created, or because you cannot send and receive mail, or both?

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