Inbox messages not visible after reading since Yosemite conversion

Since I upgraded to Yosemite on January 3rd, my Apple mail app is misbehaving. When I get new messages from gmail, they show up in the Inbox, Unread and Today mail folders but not in the overall Inbox folder. After they are read, they disappear from Inbox and Unread (of course) and are lost in the ether. If I search mail for a specific message, it finds it and indicates its either in an Important folder or  in Inbox-Gmail but it is in neither. Otherwise the message doesn't show up in Mail at all. Also the mail remains on the gmail server when I access it directly on the web.
I've tried to synchronize the mail accounts but nothing changes.
I also turned on iCloud and iDrive at the same time.
A commentator responding to my question reports
     Apple Mail is not displaying the Exchange or G-mail inbox properly. I tested this with 2 systems: 1 on Mavericks and 1 on Yosemite.           The Mavericks mail worked correctly and the Yosemite would stop displaying the inbox. I was able to perform operations (read, flag, delete, move) messages on the Mavericks system and the actions would correctly show on the Yosemite system once I re-synced the mail application. Furthermore, I only needed to click on my iCloud-based account and then go back to my Exchange account for the inbox to be displayed properly. However, after about 30-45 seconds it would again stop displaying.    I how this helps and that Apple can fix this annoying bug soon."

I can only see messages for my Exchange account if I'm looking at the "all Inboxes" in the left column. Otherwise all folders (and not just the Inbox) for my Exchange account has the problem. Once stuff is read, everything vanishes a few moments later.
It looks like Gmail and iCloud accounts also set up in Mail seem to be okay. It seems to be only my Exchange account.
I've been having to do email stuff on my iOS devices.

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