Incopy CS4 (mac) - when closing file, changes are not saved

I have a CS4 Indesign document with assignments saved. When the editor works on the file, she is able to save as she goes, however gets a dialogue box about how we are trying to save over an older file with the options 'submit changes, discard changes and I think one other option'.
When 'submit changes' is clicked we re-open the file and find that the changes have not been saved.
We don't understand why we would receive that message since we are hitting save as changes are done while working on the file.
The odd thing is that it doesn't happen on all files. And the dialogue box doesn't always show up.
One thing to note is that we recently changed from a CS2 workflow that we've been using successfully for a few years. Ie. without that particular dialogue box showing up or any save issues.
thanks all!

Lr & Photoshop both have the potential to use tiny (xmp) files for storing changes (and never save any other files), and both can save/export big honkin' tiffs, or like-sized jpegs...
If you save files in Photoshop with layers and such stuff, the files can get pretty big.
So, to answer your question: "It depends..." - which files, how saved/exported...
Try some stuff and inspect the file sizes!
Rob

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