InDesign crashes when i export a pdf, overprint preview and package

I am using CS6 on a MacBook Pro. I have version 10.8.5.
I am working on a manual (original file not created by me).
I was trying to pacakge all the files together but it kept crashing. I do not see the blank window some people have been seeing when this happens. I only get the window about letting Apple know about the problem and submitting the problem to Adobe.
Under Preflight all systems are fine, I have the green light.
I checked that paragraph styles, character styles and master pages did not have fonts missing.
I went through all files and noticed some eps's did not have fonts converted to outlines so I made them outlines and relinked them.
I also changed all RGB to CMYK.
I converted the file to an IDML, reopened InDesign. I also resaved the file to a different name.
These did not seem to help unfortunately.
If there is no visible problem, what can one do? At this point I am trying to pdf one page at a time to see if I can pinpoint as to where the issues lies.
InDesign also crashes when exporting a .pdf and when I try to run an overprint preview. So strange..

Well I don't get why this would have been the problem, but I removed the logo that was on the cover and on the back. Since the logo was all vector, I copied it and pasted it into InDesign (so no links). This allowed me to create a .pdf and to package. This logo has been used several times over and over so not sure why this was part of the issue..

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