Indesign not properly exporting overlapsing shapes

Hello,
I am making a publication in CS4. In some of my masters i've used shapes that overlaps other shapes [coloured plains]. While I am exporting the booklet the left pages are not properly exporting [shapes in the back are in the front.] while the uneven [right] pages are seemingly fine.
Does anyone have a solution?
Peter

Do these shapes that don't work correctly cross the spine?
Are you patched to 6.0.5 or higher?

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