INdividual Frames disappear

I am having problems with the individual frames on the
timeline disappearing. I have reset the settings multiple times and
cannot find any settings to put the individual frames back on. It
seems like a system wide preference because all users on the
machine have the same issue. Can anyone help?

A few things:
How much time are you willing to devote to finding a precise frame among the hundred of thousands that would be generated in single 12-hour period?  Actually, it would be 1,294,704 in 12 hours; I did the arithmetic.  Wouldn't the closest second be adequate?
Virtual Dub?  For your ends, I say, "Ugh!"
Attaching a camera to a tree isn't a bad idea; attaching a camera to a sapling or a very young tree is a different story.  You need a stable mount.
Apparently the exposure of the image isn't a very big concern, which is fine if it's okay with you.
In AE, you can run video backwards.  You can use Time Remapping, or you can go to the Stretch panel and set it to negative 100.  You'd have to move the clip in the timeline if you use it.
All in all, I get the notion that you're trying to use AE for something it wasn't designed to do.  It's primarily for effects and compositing of images shot for commercial video/film production. 
Engineers, while a being a most admirable group of individuals, aren't necessarily the prime users of the application.  You might want to investigate other avenues.
Now, I hope for your sake that I'm all wet in my remarks.  I hope other people have better solutions than mine for your situation.  Time will tell.

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