Install ConfigMgr with external sql with database name given as C-name

I'm installing ConfigMgr 2012 R2 with SQL server on a separate box. The SQL server is configured to replicate to another SQL box. I have created a C-name record to point to the primary SQL box. 
During the installation of CM12 R2, the wizard fails its prerequisite check with the following message:
"sccm 2012 configuration manager only supports the use of primary fqdn's, where DNS hostname matches NETBIOS hostname of the the computer" . 
Is there a way around this? ( like registering an SPN for SQL Server to point to the CNAME, for instance )
Thanks!

I'm installing ConfigMgr 2012 R2 with SQL server on a separate box. The SQL server is configured to replicate to another SQL box. I have created a C-name record to point to the primary SQL box. 
During the installation of CM12 R2, the wizard fails its prerequisite check with the following message:
"sccm 2012 configuration manager only supports the use of primary fqdn's, where DNS hostname matches NETBIOS hostname of the the computer" . 
Is there a way around this? ( like registering an SPN for SQL Server to point to the CNAME, for instance )
Thanks!
What is the reason for this setup? High Availability? I would recommend a VM with the SQL Server co-located with the site server instead of thats your goal. But then again I know way to little about your setup and environment in general.
Tim Nilimaa | Blog: http://infoworks.tv | Twitter: @timnilimaa

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