Installing Windows 7 with boot camp as whole partition on 2nd internal hard drive

Hi all,
I am unsure what is the recent changes with Apple boot camp. But when I used boot camp utilitiy on my Mac Pro (Mid 2010) to install windows 7 64 bits. It would not install and created a whole lot of problems.
After I initialise the process to install windows 7 using boot camp utilities, I chose the option to create a single partition to installl windows 7 on my secondary internal hard drive (1TB). After I restarted my Mac Pro and started the Windows 7 installation process, I was unable to install Windows 7 on the BOOTCAMP partition created by the boot camp utilitiy. I got an error something about Windows cannot be installed on the selected forum because the driver contained GPT details.
I tried to format the BOOTCAMP partition, but it ended up with errors. I tried to delete and recreate the BOOTCAMP partition in Windows setup, but failed with errors again. As I could not go any further with the Windows 7 installation, I had to hard reset my Mac Pro and tried to reboot back into Mac OS X Lion and that's when the nightmare begin.
Not only I could not boot into OS X, I could not use any of the startup key combinations (i.e. Hold option key to select start up disk, option + R to boot the lion recovery drive, not boot from any external firewire drive installed with OS X Lion). Basically none of the key combinations worked except for the holdingi F12 and mouse key to eject CD.
The only thing I could boot the Mac Pro with is the windows installation CD and Linux Ubuntu Raring Distro. I can install the ubuntu distro without any issue. However, I could not boot my mac pro back into OS X as Linux does not support bootcamp. The only way I could use Mac OS X Lion again is to delete the partition OS X Lion was installed on, and then I was be able to install Windows 7 without any issue.
After installing windows 7 I would have to download boot camp and then use the boot camp control panel to restart in the Mac Pro installation DVD and I will have to reinstall OS X again. After installing OS X, I went to System Preference and tried to select Windows 7 as startup disc. But I failed to as it says "Windows 7" Was installed via another utility. I would have to erase the partition and reinstall Windows 7 again using bootcamp utility. If I try to install windows 7 again, the horror I described above repeats again.
From my understanding, the Boot camp utility creates a new EFI bootrom with Master Boot Record (MBR) in FAT32 format. Therefore I could not boot back into Mac OS X without using boot camp in windows 7 as none of the boot combinations key worked.
I want to ask if anyone is experiencing the same issue as i do, and if there are any solutions to the problem I am experiencing. I never had such issue before. I was able to install Windows 7 on my 2ndary internal hard drive without issue using boot camp. I don't what has changed. I have googled for solution, I only found something related to XOM but nothing else.
If anyone can provide me with any help in regards to installing Windows 7 as a whole partition on a secondary internal hard drive. It'd be grealy appreciated. Thank you in advance.

If you have driver issue, just pre-download the boot camp drivers and save them on an external drive or burn them onto a cd, you will be able to load drivers via the advanced installation option during windows setup, that is if your osx partition isn't actively preventing you from installing win7 on the BOOTCAMP Partition created by boot camp assistant, I find this rather ironic, took me 3 days to figure out this issue, I was stuck without being able to boot into anything beside the windows cd, which wasn't even helpful as I could not install windows as I did not want to delete my osx partition. I lost all my data becsuse of it, as I had no idea what was going on. I tried to recover the partition using testdisk, hfsprogs and gparted in ubuntu life cd but they dont support HFS+. As I could not access osx terminal (couldn't even boot into osx installation dvd with that dreaded MBR created by boot csmp). I could not use pdisk in terminal to restore the osx partition map. Though luck for me. Called applecare and they had no idea what the problem was, and as usual they orgsnised for hard drive replacement. But it was clearly a software issue.
They will have to fix bay2 for me as I can no longer detect any hard disk connected to that bay.

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