Internal Drive Performs Strangely in Target Disk Mode

I am trying to use one of my internal HDs on my MacPro Mac Pro (2x3 GHz Quad-Core Intel Xeon) as a destination for a HD clone using SuperDuper.
I startup my MacPro in Target Disk mode using FW800 cable and 2 of my internal HDs show up instantly. My 3rd internal HD shows up after maybe 3 minutes for some reason. When I select it as a destination using SuperDuper, the files just don't want to copy at an acceptable speed and the app eventually errors out. Why would one internal HD not work in Target Disk mode when the 2 others do? The HD works fine when I access it from my MacPro and DIsk Utility returns no errors on the drive.
Here is the internal HD info:
*WDC WD1001FALS-00J7B0:*
Capacity: 1 TB (1,000,204,886,016 bytes)
Model: WDC WD1001FALS-00J7B0
Revision: 05.00K05
Serial Number: WD-XXXXXXXXXXXX
Native Command Queuing: Yes
Queue Depth: 32
Removable Media: No
Detachable Drive: No
BSD Name: disk0
Bay Name: Bay 3
Partition Map Type: GPT (GUID Partition Table)
S.M.A.R.T. status: Verified
Volumes:
*Bay 3:*
Capacity: 724.64 GB (724,641,513,472 bytes)
Available: 723.98 GB (723,975,241,728 bytes)
Writable: Yes
File System: Journaled HFS+
BSD Name: disk0s2
Mount Point: /Volumes/Bay 3
BOOTCAMP:
Capacity: 275.22 GB (275,217,645,568 bytes)
Available: 224.02 GB (224,015,097,856 bytes)
Writable: No
File System: NTFS
BSD Name: disk0s3
Mount Point: /Volumes/BOOTCAMP

Hi, problem solved! Thanks very much for the help. As soon as I opened up the G4 I remembered what the back of the hard drives looked like and after quickly changing the jumper blocks and hooking the computer back up everything worked as you said it would. Again, thanks! I am curious, though, is there no way to have both drives show up while in Firewire mode. It's no big deal, the migration assistant seems to have worked flawlessly but it might be handy to have both drives show later if it's possible.

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